STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0083COG2197 [TK] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. (218 aa)    
Predicted Functional Partners:
baeS
Two component system histidine kinase; COG0642 [T] Signal transduction histidine kinase.
 
 0.997
LSL_0082
Putative sugar-binding protein; COG1653 [G] ABC-type sugar transport system, periplasmic component.
 
    0.957
rbsB
D-ribose-binding protein; COG1653 [G] ABC-type sugar transport system, periplasmic component.
 
  
 0.954
baeS-3
Two component system histidine kinase; COG0642 [T] Signal transduction histidine kinase.
 
 
 0.665
LSL_0615
16S rRNA m(5)C 967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.610
LSL_0471
Transcription regulator, Crp family; COG0583 [K] Transcriptional regulator.
  
 
 0.560
birA
Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.512
LSL_0081
COG1811 [R] Uncharacterized membrane protein, possible Na+ channel or pump.
       0.471
LSL_0205
COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 0.463
manX
PTS system, mannose-specific IIAB component; COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA.
       0.462
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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