Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0087PTS system, mannose-specific IIC component; COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC. (269 aa)    
Predicted Functional Partners:
manX
PTS system, mannose-specific IIAB component; COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA.
 
 0.999
LSL_0088
PTS system, mannose-specific IID component; COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
 0.999
manX-2
PTS system, mannose-specific IIAB component; COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA.
 
 0.999
LSL_0656
PTS system, mannose-specific IID component; COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
 0.999
LSL_1714
PTS system, mannose-specific IID component; COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
 0.998
LSL_1716
PTS system, mannose-specific IIAB component; COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
 
 
 0.952
LSL_1715
PTS system, mannose-specific IIC component; COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
  
  
 
0.923
ptsH
Phosphocarrier protein HPr; COG1925 [G] Phosphotransferase system, HPr-related proteins.
    
 0.912
manA
COG1482 [G] Phosphomannose isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
  0.905
LSL_0655
PTS system, mannose-specific IIC component; COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
  
  
 
0.901
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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