Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0090Hypothetical secreted protein; COG1388 [M] FOG: LysM repeat. (516 aa)    
Predicted Functional Partners:
amiC
N-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
 
  
 0.840
LSL_1546
Hypothetical exported protein; COG5263 [R] FOG: Glucan-binding domain (YG repeat).
 
  
 0.712
LSL_0296
Phage lysin; COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
  
 0.667
LSL_0796
Hypothetical protein, phage associated.
  
  
 0.667
metG
Methionyl-tRNA synthetase / Protein secretion chaperonin CsaA; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
     
 0.637
mrcA
Multimodular transpeptidase-transglycosylase PBP 2A; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
 
  
 0.578
LSL_1535
Hypothetical exported protein; COG5263 [R] FOG: Glucan-binding domain (YG repeat).
  
  
 0.570
LSL_0294
COG5283 [S] Phage-related tail protein.
  
  
 0.567
mrcA-2
Multimodular transpeptidase-transglycosylase PBP 1A; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
 
  
 0.535
LSL_1036
Peptidoglycan binding protein, LysM domain.
 
 
 
 0.527
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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