Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0094Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
LSL_0527
Conserved hypothetical protein.
  
     0.758
LSL_0384
Conserved hypothetical protein.
 
  
 0.751
LSL_0528
Conserved hypothetical protein.
  
     0.750
LSL_0513
Hypothetical protein.
  
     0.734
LSL_0529
Conserved hypothetical protein.
  
     0.726
LSL_0874
Transcriptional regulator, MarR family; COG0583 [K] Transcriptional regulator.
  
    0.709
LSL_0160
Hypothetical protein.
  
     0.695
LSL_1622
Transcriptional regulator, Cro/CI family; COG0583 [K] Transcriptional regulator.
  
     0.679
LSL_1448
Hypothetical membrane spanning protein.
  
     0.651
LSL_1485
Conserved hypothetical protein.
  
     0.632
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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