Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0126CAAX amino terminal protease family; COG1266 [R] Predicted metal-dependent membrane protease. (287 aa)    
Predicted Functional Partners:
gpmB
Phosphoglycerate mutase; COG0406 [G] Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.
  
    0.619
fldA
Flavodoxin; COG0716 [C] Flavodoxins.
       0.530
LSL_0128
COG1791 [S] Uncharacterized conserved protein, contains double-stranded beta-helix domain.
       0.508
LSL_0221
COG0842 [V] ABC-type multidrug transport system, permease component.
  
    0.439
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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