STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
LSL_0134NAD(P)H-dependent quinone reductase; COG0778 [C] Nitroreductase. (214 aa)    
Predicted Functional Partners:
menE
O-succinylbenzoic acid--CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
   
   0.582
LSL_0221
COG0842 [V] ABC-type multidrug transport system, permease component.
  
  
 0.563
birA
Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.559
LSL_0135
Acetoacetate decarboxylase.
       0.535
tadA
Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.533
LSL_0136
COG1250 [I] 3-hydroxyacyl-CoA dehydrogenase.
  
    0.519
LSL_1720
Hypothetical membrane spanning protein.
 
    0.441
gloA
Glyoxalase family protein; COG0346 [E] Lactoylglutathione lyase and related lyases.
  
    0.421
LSL_1463
COG0346 [E] Lactoylglutathione lyase and related lyases.
  
    0.421
LSL_1680
Glyoxalase family protein.
  
    0.421
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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