Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0160Hypothetical protein. (116 aa)    
Predicted Functional Partners:
LSL_1469
Conserved hypothetical protein.
  
     0.735
LSL_0364
Conserved hypothetical protein.
  
     0.700
LSL_0094
Conserved hypothetical protein.
  
     0.695
LSL_0161
COG1707 [R] ACT domain-containing protein; Belongs to the UPF0237 family.
       0.530
FabG
Short chain dehydrogenase; COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.527
LSL_0943
Conserved hypothetical protein.
  
     0.515
LSL_0162
Converved hypothetical protein; COG0011 [S] Uncharacterized conserved protein.
       0.502
LSL_0166
Hypothetical membrane spanning protein.
 
     0.490
LSL_1368
Hypothetical membrane spanning protein; COG1988 [R] Predicted membrane-bound metal-dependent hydrolases.
  
     0.488
LSL_0527
Conserved hypothetical protein.
  
     0.462
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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