STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0163COG1349 [KG] Transcriptional regulators of sugar metabolism. (251 aa)    
Predicted Functional Partners:
fruK
1-phosphofructokinase; COG1105 [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.987
fruA
COG1299 [G] Phosphotransferase system, fructose-specific IIC component.
 
  
 0.982
LSL_1153
Hydrolase, HAD superfamily; COG0561 [R] Predicted hydrolases of the HAD superfamily.
 
    0.597
LSL_1628
COG3711 [K] Transcriptional antiterminator.
  
  
 0.580
ccpA
Catabolite control protein A; COG1522 [K] Transcriptional regulators.
  
   
 0.554
scrA
PTS system, sucrose-specific IIABC component; COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
  
 0.484
treB
PTS system, trehalose-specific IIBC component; COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
  
 0.484
LSL_0167
Hypothetical membrane spanning protein.
       0.449
LSL_0162
Converved hypothetical protein; COG0011 [S] Uncharacterized conserved protein.
  
    0.448
LSL_0166
Hypothetical membrane spanning protein.
       0.446
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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