STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0166Hypothetical membrane spanning protein. (400 aa)    
Predicted Functional Partners:
LSL_0167
Hypothetical membrane spanning protein.
 
   
 0.916
LSL_1547
Oligosaccharide translocase; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase.
 
    0.772
LSL_0610
Hypothetical protein.
  
     0.746
LSL_0694
Galactofuranosyltransferase.
 
     0.727
LSL_1272
COG0344 [S] Predicted membrane protein.
 
     0.637
LSL_1732
Hypothetical secreted protein.
  
     0.634
LSL_1592
Hypothetical membrane spanning protein.
 
     0.616
LSL_0841
Hypothetical membrane spanning protein.
  
     0.614
rfaG-24
Glycosyltransferase.
 
    0.586
fruA
COG1299 [G] Phosphotransferase system, fructose-specific IIC component.
     
 0.574
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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