Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0167Hypothetical membrane spanning protein. (225 aa)    
Predicted Functional Partners:
LSL_0166
Hypothetical membrane spanning protein.
 
   
 0.858
LSL_1300
Conserved hypothetical protein.
  
     0.627
fruA
COG1299 [G] Phosphotransferase system, fructose-specific IIC component.
       0.498
LSL_0384
Conserved hypothetical protein.
  
     0.481
LSL_1588
Hypothetical exported protein.
  
     0.455
LSL_0163
COG1349 [KG] Transcriptional regulators of sugar metabolism.
       0.446
fruK
1-phosphofructokinase; COG1105 [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
       0.446
LSL_1037
Conserved hypothetical protein; COG0639 [T] Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
 
     0.415
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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