STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
rfaG-2COG0463 [M] Glycosyltransferases involved in cell wall biogenesis. (311 aa)    
Predicted Functional Partners:
guaA
COG0518 [F] GMP synthase - Glutamine amidotransferase domain; glutamine-hydrolyzing.
       0.678
LSL_1089
COG0344 [S] Predicted membrane protein.
 
  
 0.621
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.537
LSL_1271
Cell wall teichoic acid glycosylation protein gtcA; COG0344 [S] Predicted membrane protein.
 
  
 0.509
LSL_1272
COG0344 [S] Predicted membrane protein.
 
  
 0.494
LSL_0170
DegV family protein; COG0718 [S] Uncharacterized protein conserved in bacteria.
  
    0.492
LSL_0994
Aminotransferase; COG0399 [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.488
tagH
Teichoic acid translocation ATP-binding protein; COG1134 [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.471
rfaG-21
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.421
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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