STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0176Hypothetical protein, ErfK family; COG0718 [S] Uncharacterized protein conserved in bacteria. (246 aa)    
Predicted Functional Partners:
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).
  
    0.580
menE
O-succinylbenzoic acid--CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
       0.563
LSL_0364
Conserved hypothetical protein.
  
     0.540
LSL_0387
Hypothetical protein.
  
     0.526
LSL_1242
Protein translocase subunit secE; Belongs to the SecE/SEC61-gamma family.
  
     0.522
LSL_1300
Conserved hypothetical protein.
  
     0.515
LSL_0179
COG4690 [E] Dipeptidase.
 
     0.500
LSL_0177
Multidrug resistance protein B; COG0477 [GEPR] Permeases of the major facilitator superfamily.
  
    0.495
LSL_0178
Transcriptional regulator, MarR family; COG0583 [K] Transcriptional regulator.
       0.489
LSL_0610
Hypothetical protein.
  
     0.461
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.