STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0211Transcriptional regulator, TetR family; COG0583 [K] Transcriptional regulator. (216 aa)    
Predicted Functional Partners:
LSL_0210
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.805
LSL_0212
COG1132 [V] ABC-type multidrug transport system, ATPase and permease components.
 
     0.772
LSL_1374
ABC transporter permease protein; COG0577 [V] ABC-type antimicrobial peptide transport system, permease component.
 
    0.516
dxs
1-deoxy-D-xylulose 5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.493
LSL_0208
Hypothetical membrane spanning protein; COG0477 [GEPR] Permeases of the major facilitator superfamily.
 
    0.480
LSL_1375
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 
   0.416
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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