Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0220ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component. (241 aa)    
Predicted Functional Partners:
LSL_0221
COG0842 [V] ABC-type multidrug transport system, permease component.
  
 0.991
LSL_0222
Transcriptional regulator, TetR family; COG0583 [K] Transcriptional regulator.
 
     0.959
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.899
LSL_0119
ABC transporter, ATP-binding protein; COG1101 [R] ABC-type uncharacterized transport system, ATPase component.
 
     
0.790
LSL_0725
Hypothetical ABC transporter permease protein; COG3559 [M] Putative exporter of polyketide antibiotics.
 
 
 0.660
gppA
COG0248 [FP] Exopolyphosphatase.
       0.497
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
      0.494
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.428
atpD
ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
   0.403
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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