Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0221COG0842 [V] ABC-type multidrug transport system, permease component. (370 aa)    
Predicted Functional Partners:
LSL_0220
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
  
 0.991
LSL_0222
Transcriptional regulator, TetR family; COG0583 [K] Transcriptional regulator.
 
     0.960
LSL_0724
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
  
 0.797
LSL_0478
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
  
 0.669
LSL_1384
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
  
 0.628
LSL_0134
NAD(P)H-dependent quinone reductase; COG0778 [C] Nitroreductase.
  
  
 0.563
LSL_1376
COG0778 [C] Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.563
gppA
COG0248 [FP] Exopolyphosphatase.
       0.498
LSL_1187
Transporter, MFS superfamily; COG2807 [P] Cyanate permease.
  
    0.451
LSL_0126
CAAX amino terminal protease family; COG1266 [R] Predicted metal-dependent membrane protease.
  
    0.439
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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