Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
LSL_0223Amino acid ABC transporter, substrate binding protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (267 aa)    
Predicted Functional Partners:
LSL_1626
COG0765 [E] ABC-type amino acid transport system, permease component.
 
 
 0.749
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
  
 
 0.596
LSL_1625
COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
 
 0.555
LSL_0224
COG1257 [I] Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
       0.552
LSL_0225
IpaB/EvcA family protein.
       0.552
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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