STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0286DNA packaging, phage associated. (107 aa)    
Predicted Functional Partners:
LSL_0290
Phage major tail protein.
       0.818
LSL_0288
Phage head-tail joining protein.
       0.817
LSL_0287
Phage head-tail joining protein.
       0.815
LSL_0289
Phage tail protein.
       0.809
LSL_0285
Major head protein.
       0.803
LSL_0283
Portal protein; COG4672 [S] Phage-related protein.
       0.799
LSL_0281
Terminase large subunit; COG4626 [R] Phage terminase-like protein, large subunit.
       0.791
LSL_0280
COG3728 [L] Phage terminase, small subunit.
       0.786
clpP
COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; Belongs to the peptidase S14 family.
       0.770
LSL_0282
Phage head-tail joining protein.
       0.752
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.