Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
udpPhosphorylase, Pnp/Udp family; COG2820 [F] Uridine phosphorylase. (256 aa)    
Predicted Functional Partners:
LSL_0323
ABC transporter, ATP-binding protein; COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains.
       0.563
LSL_0320
2,5-diketo-D-gluconic acid reductase; COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase.
  
   0.560
LSL_0321
Hypothetical protein.
       0.527
treB
PTS system, trehalose-specific IIBC component; COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
   
 0.449
LSL_0324
Metallo-beta-lactamase family protein; COG2220 [R] Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family.
       0.423
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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