Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0348Hypothetical membrane spanning protein. (218 aa)    
Predicted Functional Partners:
LSL_1441
Hypothetical protein.
  
     0.552
rpmE
COG0254 [J] Ribosomal protein L31.
       0.547
LSL_0158
COG0392 [S] Predicted integral membrane protein.
  
     0.446
LSL_0387
Hypothetical protein.
  
     0.429
LSL_0421
Conserved hypothetical protein.
  
     0.420
topB
DNA topoisomerase III; COG0550 [L] Topoisomerase IA.
 
     0.414
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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