Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0364Conserved hypothetical protein. (238 aa)    
Predicted Functional Partners:
LSL_0362
COG2404 [R] Predicted phosphohydrolase (DHH superfamily).
 
     0.723
LSL_0160
Hypothetical protein.
  
     0.700
LSL_1300
Conserved hypothetical protein.
  
     0.658
LSL_1586
ABC transporter, ATP-binding protein; COG1121 [P] ABC-type Mn/Zn transport systems, ATPase component.
  
     0.614
LSL_1368
Hypothetical membrane spanning protein; COG1988 [R] Predicted membrane-bound metal-dependent hydrolases.
  
     0.592
LSL_1285
Hypothetical protein.
  
     0.588
def
Peptide deformylase; COG0242 [J] N-formylmethionyl-tRNA deformylase.
       0.545
LSL_0176
Hypothetical protein, ErfK family; COG0718 [S] Uncharacterized protein conserved in bacteria.
  
     0.540
LSL_0058
Hypothetical protein.
  
     0.533
LSL_1575
Hypothetical membrane associated protein; COG1266 [R] Predicted metal-dependent membrane protease.
  
     0.517
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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