STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0424ComG operon protein 1; COG2804 [NU] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (327 aa)    
Predicted Functional Partners:
LSL_0425
ComG operon protein 2; COG1459 [NU] Type II secretory pathway, component PulF.
 
 
 0.997
LSL_0426
ComG operon protein 3.
  
  
 0.971
LSL_0427
Hypothetical protein.
  
 
 0.969
pilD
COG1989 [NOU] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
 
 0.883
LSL_0680
ComE operon protein 3; COG2248 [R] Predicted hydrolase (metallo-beta-lactamase superfamily).
 
  
 0.810
LSL_1207
ComF operon protein 1; COG4098 [L] Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
   
  
 0.785
LSL_0428
Hypothetical protein.
       0.773
LSL_0429
Hypothetical protein.
       0.773
LSL_0432
COG0827 [L] Adenine-specific DNA methylase.
       0.720
comEA
COG1555 [L] DNA uptake protein and related DNA-binding proteins.
  
  
 0.682
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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