Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LSL_0434Phosphoesterase; COG4186 [R] Predicted phosphoesterase or phosphohydrolase. (201 aa)    
Predicted Functional Partners:
LSL_0435
COG0718 [S] Uncharacterized protein conserved in bacteria.
       0.726
nagD
N-acetylglucosamine catabolic protein; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
       0.720
LSL_0437
COG0344 [S] Predicted membrane protein.
       0.720
LSL_0411
Hypothetical protein.
  
     0.564
LSL_0225
IpaB/EvcA family protein.
  
     0.546
LSL_0387
Hypothetical protein.
  
     0.535
LSL_0433
Amino acid permease; COG1113 [E] Gamma-aminobutyrate permease and related permeases.
       0.527
LSL_0879
Phosphoesterase; COG1408 [R] Predicted phosphohydrolases.
 
     0.463
LSL_0044
Oxidoreductase; COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases.
  
     0.460
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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