STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0435COG0718 [S] Uncharacterized protein conserved in bacteria. (194 aa)    
Predicted Functional Partners:
nagD
N-acetylglucosamine catabolic protein; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
 
  
 0.940
LSL_0437
COG0344 [S] Predicted membrane protein.
       0.846
dnaB
COG3611 [L] Replication initiation/membrane attachment protein.
  
    0.764
LSL_0434
Phosphoesterase; COG4186 [R] Predicted phosphoesterase or phosphohydrolase.
       0.726
LSL_0659
COG0718 [S] Uncharacterized protein conserved in bacteria.
  
   
 0.652
LSL_0417
Conserved hypothetical protein; COG4768 [R] Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain.
  
     0.646
LSL_0500
GTP-binding protein; COG1160 [R] Predicted GTPases.
  
     0.595
LSL_0606
Hypothetical protein.
  
     0.572
LSL_0506
Conserved hypothetical protein; COG1399 [R] Predicted metal-binding, possibly nucleic acid-binding protein.
  
     0.550
LSL_0641
Hypothetical protein.
  
     0.521
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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