Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0478ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component. (246 aa)    
Predicted Functional Partners:
LSL_0479
Protein ecsB; COG4473 [U] Predicted ABC-type exoprotein transport system, permease component.
 
  
 0.978
LSL_1695
Oligopeptide transport ATP-binding protein oppF; COG4608 [E] ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
     
0.899
LSL_0477
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); COG0537 [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
 
  
 0.838
LSL_0480
Phosphotransferase enzyme family; COG0510 [M] Predicted choline kinase involved in LPS biosynthesis.
       0.682
LSL_0221
COG0842 [V] ABC-type multidrug transport system, permease component.
  
 0.669
trmB
tRNA (m(7)G46) methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.653
LSL_0725
Hypothetical ABC transporter permease protein; COG3559 [M] Putative exporter of polyketide antibiotics.
 
 
 0.620
LSL_0476
Hypothetical protein.
       0.537
LSL_0565
Membrane endopeptidase, M50 family; COG0750 [M] Predicted membrane-associated Zn-dependent proteases 1.
 
   
 0.532
oppC
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
    
 0.520
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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