Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0546Transposase ISLasa5a, IS3 family; COG0675 [L] Transposase and inactivated derivatives. (459 aa)    
Predicted Functional Partners:
LSL_0049
Transposase ISLasa1a, IS1223 family; COG0675 [L] Transposase and inactivated derivatives.
 
  
 0.787
LSL_0586
Transposase ISLasa7, IS3 family; COG0675 [L] Transposase and inactivated derivatives.
 
  
 0.756
LSL_0545
Hypothetical membrane spanning protein.
       0.584
LSL_0544
Hypothetical protein; COG1694 [R] Predicted pyrophosphatase.
 
     0.481
LSL_0547
Hypothetical protein; COG0419 [L] ATPase involved in DNA repair.
       0.442
birA
Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.439
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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