Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_0550Integral membrane protein, Rhomboid family; COG0705 [R] Uncharacterized membrane protein (homolog of Drosophila rhomboid). (220 aa)    
Predicted Functional Partners:
LSL_0549
COG0212 [H] 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.938
LSL_0551
COG0718 [S] Uncharacterized protein conserved in bacteria.
     
 0.832
LSL_0552
Glucokinase; COG1940 [KG] Transcriptional regulator/sugar kinase.
       0.777
rpmG
COG0267 [J] Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.741
LSL_0553
Conserved hypothetical protein, rhodanese-like domain; COG0607 [P] Rhodanese-related sulfurtransferase.
  
  
 0.733
amiC
N-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
   
   0.658
rimP
Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
      
 0.603
LSL_1088
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
 
     0.479
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.460
LSL_0547
Hypothetical protein; COG0419 [L] ATPase involved in DNA repair.
  
    0.457
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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