Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0583Hypothetical protein. (109 aa)    
Predicted Functional Partners:
LSL_1609
Hypothetical protein.
  
     0.607
ampC
Beta-lactamase family protein; COG1680 [V] Beta-lactamase class C and other penicillin binding proteins.
       0.569
LSL_1440
NAD-dependent oxidoreductase; COG0673 [R] Predicted dehydrogenases and related proteins.
  
    0.548
baeS-3
Two component system histidine kinase; COG0642 [T] Signal transduction histidine kinase.
  
     0.504
LSL_0527
Conserved hypothetical protein.
  
     0.499
LSL_1732
Hypothetical secreted protein.
  
     0.496
LSL_1371
Peptidoglycan binding protein, LysM domain.
  
     0.482
LSL_1101
Phosphoesterase; COG0622 [R] Predicted phosphoesterase.
  
     0.435
LSL_0554
Conserved hypothetical protein.
  
     0.424
LSL_0448
Hypothetical protein.
  
     0.419
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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