STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0586Transposase ISLasa7, IS3 family; COG0675 [L] Transposase and inactivated derivatives. (222 aa)    
Predicted Functional Partners:
LSL_0585
Transposase ISLasa6a, IS3 family; COG0675 [L] Transposase and inactivated derivatives.
  
 0.959
LSL_0546
Transposase ISLasa5a, IS3 family; COG0675 [L] Transposase and inactivated derivatives.
  
 0.773
LSL_0049
Transposase ISLasa1a, IS1223 family; COG0675 [L] Transposase and inactivated derivatives.
  
     0.711
LSL_0587
Cobyric acid synthase; COG0121 [R] Predicted glutamine amidotransferase.
       0.522
murE-2
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; COG0769 [M] UDP-N-acetylmuramyl tripeptide synthase.
       0.522
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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