Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0703Integrase/recombinase xerD. (276 aa)    
Predicted Functional Partners:
LSL_0704
Hypothetical membrane spanning protein; COG0011 [S] Uncharacterized conserved protein.
       0.773
LSL_1487
Hypothetical membrane spanning protein.
  
     0.694
LSL_0513
Hypothetical protein.
  
     0.661
LSL_0072
Hypothetical protein.
 
     0.589
pcnB
Poly(A) polymerase / tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
  
    0.579
azlC
COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance).
  
    0.556
comFC
ComF operon protein 3; COG1040 [R] Predicted amidophosphoribosyltransferases.
  
    0.551
LSL_0606
Hypothetical protein.
  
     0.540
LSL_0094
Conserved hypothetical protein.
  
     0.538
LSL_0448
Hypothetical protein.
  
     0.518
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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