STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0716COG0718 [S] Uncharacterized protein conserved in bacteria; Belongs to the UPF0346 family. (75 aa)    
Predicted Functional Partners:
LSL_0714
Lipase/Acylhydrolase with GDSL-like motif; COG2755 [E] Lysophospholipase L1 and related esterases.
 
  
 0.938
LSL_0715
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
   
 0.921
LSL_0717
GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.774
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.770
LSL_0719
DNA processing protein; COG0758 [LU] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
       0.701
LSL_0851
Tetratricopeptide repeat family protein; COG0457 [R] FOG: TPR repeat.
 
     0.698
LSL_0394
Sulfatase family protein; COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.673
LSL_0941
RibT protein.
  
     0.667
LSL_0551
COG0718 [S] Uncharacterized protein conserved in bacteria.
  
     0.659
LSL_0465
Sulfatase family protein; COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
     0.632
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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