Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xerC-2COG0582 [L] Integrase; Belongs to the 'phage' integrase family. (373 aa)    
Predicted Functional Partners:
LSL_0730
Hypothetical protein, phage associated.
       0.727
LSL_0794
COG5283 [S] Phage-related tail protein.
 
     0.557
LSL_0256
Hypothetical protein, phage associated.
 
     0.480
LSL_1191
Phage transcriptional regulator, Cro/CI family; COG0640 [K] Predicted transcriptional regulators.
 
    0.478
LSL_0742
Phage transcriptional regulator, Cro/CI family; COG0640 [K] Predicted transcriptional regulators.
 
    0.476
LSL_0731
Hypothetical protein, phage associated.
       0.457
comFC
ComF operon protein 3; COG1040 [R] Predicted amidophosphoribosyltransferases.
   
    0.441
LSL_1202
DNA primase; COG0433 [R] Predicted ATPase.
 
     0.402
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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