Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0730Hypothetical protein, phage associated. (60 aa)    
Predicted Functional Partners:
xerC-2
COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
       0.727
LSL_0058
Hypothetical protein.
  
     0.526
LSL_0231
Conserved hypothetical protein; COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold.
  
     0.521
LSL_0731
Hypothetical protein, phage associated.
       0.482
LSL_1544
Multidrug resistance efflux pump; COG0477 [GEPR] Permeases of the major facilitator superfamily.
  
     0.445
LSL_1316
Transcriptional regulator, TetR family; COG0583 [K] Transcriptional regulator.
  
     0.442
LSL_0547
Hypothetical protein; COG0419 [L] ATPase involved in DNA repair.
  
     0.439
LSL_0257
Replisome organizer, phage associated.
  
     0.407
LSL_0672
Hypothetical membrane spanning protein.
  
     0.407
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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