Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0746Phage antirepressor. (143 aa)    
Predicted Functional Partners:
LSL_0251
COG3645 [S] Uncharacterized phage-encoded protein.
     0.862
LSL_0745
Phage antirepressor.
       0.732
LSL_0744
Phage antirepressor.
       0.721
LSL_0743
Hypothetical protein, phage associated.
       0.707
LSL_0742
Phage transcriptional regulator, Cro/CI family; COG0640 [K] Predicted transcriptional regulators.
 
     0.634
LSL_0256
Hypothetical protein, phage associated.
 
     0.552
LSL_0747
Hypothetical protein, phage associated.
       0.538
LSL_0748
Hypothetical protein, phage associated.
       0.538
LSL_0794
COG5283 [S] Phage-related tail protein.
  
     0.537
mcrA-2
COG1403 [V] Restriction endonuclease.
 
     0.446
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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