Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0757Hypothetical protein, phage associated. (155 aa)    
Predicted Functional Partners:
LSL_0756
Phage NTP-binding protein.
       0.752
LSL_0755
Hypothetical protein, phage associated.
       0.628
LSL_0752
Phage helicase; COG0553 [KL] Superfamily II DNA/RNA helicases, SNF2 family.
  
    0.616
LSL_0754
Hypothetical protein, phage associated.
       0.601
LSL_0753
Hypothetical protein, phage associated.
       0.565
LSL_0758
Phage DNA polymerase.
       0.536
LSL_0759
Phage primase.
       0.479
LSL_0760
Phage DNA primase; COG0433 [R] Predicted ATPase.
       0.479
LSL_0761
Hypothetical protein, phage associated.
       0.434
LSL_0750
Hypothetical protein, phage associated.
       0.424
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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