STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerC-3COG0582 [L] Integrase; Belongs to the 'phage' integrase family. (315 aa)    
Predicted Functional Partners:
LSL_0763
Hypothetical protein, phage associated.
       0.773
LSL_0764
Hypothetical protein, phage associated.
       0.773
LSL_0766
Hypothetical protein, phage associated.
       0.773
LSL_0767
Hypothetical protein, phage associated; COG0286 [V] Type I restriction-modification system methyltransferase subunit.
     
 0.702
LSL_0768
Hypothetical protein, phage associated.
       0.701
LSL_0769
Hypothetical protein, phage associated.
       0.660
hsdS-3
Type I restriction-modification system specificity subunit; COG0732 [V] Restriction endonuclease S subunits.
 
     0.581
hsdS-2
Type I restriction-modification system specificity subunit; COG0732 [V] Restriction endonuclease S subunits.
     0.548
LSL_0760
Phage DNA primase; COG0433 [R] Predicted ATPase.
 
     0.507
LSL_0762
Hypothetical protein, phage associated.
       0.477
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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