Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0796Hypothetical protein, phage associated. (616 aa)    
Predicted Functional Partners:
LSL_0795
Hypothetical protein, phage associated.
 
    0.960
LSL_0797
Phage lysin; COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
    0.813
LSL_0794
COG5283 [S] Phage-related tail protein.
 
   
 0.794
LSL_0294
COG5283 [S] Phage-related tail protein.
 
     0.784
LSL_0295
Hypothetical protein, phage associated.
 
    0.776
LSL_0289
Phage tail protein.
 
     0.772
LSL_0288
Phage head-tail joining protein.
 
     0.767
LSL_0290
Phage major tail protein.
 
     0.735
LSL_0547
Hypothetical protein; COG0419 [L] ATPase involved in DNA repair.
 
     0.721
LSL_0280
COG3728 [L] Phage terminase, small subunit.
 
     0.719
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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