STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araT-2COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase. (387 aa)    
Predicted Functional Partners:
dapH
Tetrahydrodipicolinate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
 
 0.915
LSL_0469
N-acetyldiaminopimelate deacetylase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
    
 0.908
araT
COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase.
  
  
 
0.905
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.602
LSL_0834
Transcriptional regulator, DeoR family; COG1349 [KG] Transcriptional regulators of sugar metabolism.
       0.592
ldhA
COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.524
fldA
Flavodoxin; COG0716 [C] Flavodoxins.
      
 0.425
fldA-2
Flavodoxin; COG0716 [C] Flavodoxins.
      
 0.425
thrA
COG0460 [E] Homoserine dehydrogenase.
 
 
 0.409
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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