STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0875DegV family protein; COG0718 [S] Uncharacterized protein conserved in bacteria. (310 aa)    
Predicted Functional Partners:
LSL_0621
Conserved hypothetical protein; COG1461 [R] Predicted kinase related to dihydroxyacetone kinase.
 
 0.993
LSL_0620
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
    0.726
LSL_0874
Transcriptional regulator, MarR family; COG0583 [K] Transcriptional regulator.
       0.715
LSL_0873
Fibronectin-binding protein / Fibrinogen-binding protein; COG1293 [K] Predicted RNA-binding protein homologous to eukaryotic snRNP.
       0.646
lepB
COG0681 [U] Signal peptidase I; Belongs to the peptidase S26 family.
       0.485
rex
Redox-sensitive transcriptional regulator Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.444
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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