STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCN-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family. (282 aa)    
Predicted Functional Partners:
LSL_0090
Hypothetical secreted protein; COG1388 [M] FOG: LysM repeat.
 
  
 0.840
LSL_0794
COG5283 [S] Phage-related tail protein.
  
   0.679
LSL_0550
Integral membrane protein, Rhomboid family; COG0705 [R] Uncharacterized membrane protein (homolog of Drosophila rhomboid).
   
   0.658
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.630
LSL_0304
Phage lysin; COG1388 [M] FOG: LysM repeat.
  
  
 0.598
LSL_0805
Phage lysin; COG1388 [M] FOG: LysM repeat.
  
  
 0.598
phoH
PhoH protein; COG1702 [T] Phosphate starvation-inducible protein PhoH, predicted ATPase.
       0.577
LSL_1053
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
 
  
 0.574
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
  
 0.561
dgkA
COG0818 [M] Diacylglycerol kinase.
       0.561
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.