Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0901Conserved hypothetical protein. (183 aa)    
Predicted Functional Partners:
LSL_0903
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
     0.793
mreD
COG1792 [M] Cell shape-determining protein.
 
     0.752
cmk
COG0283 [F] Cytidylate kinase.
       0.747
recQ
COG0514 [L] Superfamily II DNA helicase.
       0.686
LSL_0527
Conserved hypothetical protein.
  
     0.683
LSL_1448
Hypothetical membrane spanning protein.
  
     0.675
LSL_0528
Conserved hypothetical protein.
  
     0.618
LSL_1288
Conserved hypothetical protein.
  
     0.588
LSL_0340
Conserved hypothetical protein.
  
     0.586
LSL_0861
Conserved hypothetical protein.
  
     0.566
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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