STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0907Hypothetical membrane spanning protein. (514 aa)    
Predicted Functional Partners:
LSL_0906
Hypothetical membrane spanning protein.
 
    0.963
LSL_0905
COG0720 [H] 6-pyruvoyl-tetrahydropterin synthase.
 
     0.821
LSL_1016
Conserved hypothetical protein; COG2200 [T] FOG: EAL domain.
 
     0.588
LSL_0908
Hypothetical protein.
       0.581
treB
PTS system, trehalose-specific IIBC component; COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
     0.490
LSL_1731
COG0726 [G] Predicted xylanase/chitin deacetylase.
 
  
 0.471
LSL_1566
Conserved hypothetical protein; COG0344 [S] Predicted membrane protein.
  
     0.428
LSL_0334
Hypothetical secreted protein.
  
     0.419
LSL_1154
Conserved hypothetical protein.
  
     0.402
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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