STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
hsdS-3Type I restriction-modification system specificity subunit; COG0732 [V] Restriction endonuclease S subunits. (384 aa)    
Predicted Functional Partners:
hsdM
COG0286 [V] Type I restriction-modification system methyltransferase subunit.
 
 
 0.993
hsdR
Type I restriction-modification system restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.986
xerC-4
DNA integration/recombination/inversion protein; COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
 
     0.881
LSL_0767
Hypothetical protein, phage associated; COG0286 [V] Type I restriction-modification system methyltransferase subunit.
  
 
 0.809
xerC-3
COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
 
     0.581
LSL_0921
Hypothetical protein.
       0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.402
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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