STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0926Zwittermicin A resistance protein zmaR. (252 aa)    
Predicted Functional Partners:
LSL_0877
COG0718 [S] Uncharacterized protein conserved in bacteria.
      0.718
mbp3
Mucus binding protein.
  
     0.690
LSL_0925
Hypothetical protein.
       0.572
LSL_0922
Phosphohydrolase, MutT/nudix family protein; COG1051 [F] ADP-ribose pyrophosphatase.
 
    0.505
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.487
draG
COG1397 [O] ADP-ribosylglycohydrolase.
 
     0.482
LSL_0927
Hypothetical protein.
       0.480
wecD
Acetyltransferase, GNAT family.
  
    0.458
LSL_0981
Oligosaccharide translocase; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase.
 
    0.430
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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