STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0941RibT protein. (121 aa)    
Predicted Functional Partners:
rluB
Ribosomal large subunit pseudouridine synthase B; COG1187 [J] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
       0.856
scpB
Segregation and condensation protein ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.856
scpA
Segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.856
LSL_1347
Lipoprotein, pheromone precursor; COG4851 [R] Protein involved in sex pheromone biosynthesis.
  
     0.752
LSL_0432
COG0827 [L] Adenine-specific DNA methylase.
  
     0.705
LSL_0399
Conserved hypothetical protein; COG2761 [Q] Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
  
     0.680
LSL_0716
COG0718 [S] Uncharacterized protein conserved in bacteria; Belongs to the UPF0346 family.
  
     0.667
LSL_0851
Tetratricopeptide repeat family protein; COG0457 [R] FOG: TPR repeat.
  
     0.667
LSL_0937
Conserved hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
 
     0.626
LSL_0903
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
     0.625
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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