Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0960Hypothetical protein. (77 aa)    
Predicted Functional Partners:
LSL_0961
Hypothetical protein.
       0.737
LSL_0295
Hypothetical protein, phage associated.
  
     0.654
LSL_0795
Hypothetical protein, phage associated.
  
     0.645
LSL_0962
Hypothetical protein.
       0.586
LSL_0957
Hypothetical protein.
       0.505
LSL_0958
Hypothetical protein.
       0.505
LSL_0959
Hypothetical protein.
       0.505
LSL_0288
Phage head-tail joining protein.
  
     0.494
LSL_0294
COG5283 [S] Phage-related tail protein.
  
     0.471
LSL_0280
COG3728 [L] Phage terminase, small subunit.
  
     0.454
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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