STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0972COG1395 [K] Predicted transcriptional regulator. (153 aa)    
Predicted Functional Partners:
LSL_0973
Conserved hypothetical protein; COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases.
 
  
 0.851
LSL_0971
Zinc finger protein; COG0011 [S] Uncharacterized conserved protein.
       0.773
nifS
COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
  
 0.657
nifS-2
COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
  
  
 0.657
qor
COG0604 [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
   
 0.605
arsC-3
Arsenate reductase; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily.
  
  
 0.501
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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