STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0973Conserved hypothetical protein; COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases. (281 aa)    
Predicted Functional Partners:
LSL_0972
COG1395 [K] Predicted transcriptional regulator.
 
  
 0.851
LSL_1134
Peptidase, M16 family; COG0612 [R] Predicted Zn-dependent peptidases.
   
 
 0.799
LSL_1449
Hypothetical exported protein; COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein).
   
 0.795
LSL_1591
Conserved hypothetical protein; COG0596 [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
   0.719
aes
Endo-1,4-beta-xylanase; COG0657 [I] Esterase/lipase.
  
   0.708
frdA
COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
 0.696
LSL_0514
COG1428 [F] Deoxynucleoside kinases.
   
 0.686
LSL_1642
COG1428 [F] Deoxynucleoside kinases.
   
 0.686
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 0.632
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.632
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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