STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_0980UDP-glucuronate 4-epimerase; COG0451 [MG] Nucleoside-diphosphate-sugar epimerases. (359 aa)    
Predicted Functional Partners:
ugd
COG1004 [M] Predicted UDP-glucose 6-dehydrogenase.
 
 0.987
rfaG-8
COG0438 [M] Glycosyltransferase.
 
    0.848
galU
UTP--glucose-1-phosphate uridylyltransferase; COG1210 [M] UDP-glucose pyrophosphorylase.
  
 
 0.830
LSL_0981
Oligosaccharide translocase; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase.
  
  
 0.789
rfaG-9
COG0438 [M] Glycosyltransferase.
  
    0.731
rfaG-17
COG0438 [M] Glycosyltransferase.
 
    0.686
rfaG-15
COG0438 [M] Glycosyltransferase.
 
    0.667
rfaG-16
COG0438 [M] Glycosyltransferase.
 
    0.664
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.663
rfaG-10
Glycosyltransferase; COG3754 [M] Lipopolysaccharide biosynthesis protein.
       0.662
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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