STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG-10Glycosyltransferase; COG3754 [M] Lipopolysaccharide biosynthesis protein. (371 aa)    
Predicted Functional Partners:
rfaG-9
COG0438 [M] Glycosyltransferase.
 
    0.749
LSL_0981
Oligosaccharide translocase; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase.
  
    0.678
ugd
COG1004 [M] Predicted UDP-glucose 6-dehydrogenase.
       0.669
LSL_0980
UDP-glucuronate 4-epimerase; COG0451 [MG] Nucleoside-diphosphate-sugar epimerases.
       0.662
rfaG-8
COG0438 [M] Glycosyltransferase.
  
    0.659
rfaG-11
Glycosyltransferase; COG3754 [M] Lipopolysaccharide biosynthesis protein.
 
    
0.534
mnmE
tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.530
rfaG-16
COG0438 [M] Glycosyltransferase.
 
    0.515
rfaG-15
COG0438 [M] Glycosyltransferase.
 
    0.514
rfaG-12
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
  
    0.503
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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