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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG-12COG0463 [M] Glycosyltransferases involved in cell wall biogenesis. (295 aa)    
Predicted Functional Partners:
rfaG-14
COG0438 [M] Glycosyltransferase.
 
    0.858
rfaG-13
Glycosyltransferase; COG1216 [R] Predicted glycosyltransferases.
  
  
 0.774
rfaG-23
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
  
     0.774
rfaG-15
COG0438 [M] Glycosyltransferase.
 
    0.770
LSL_0985
Conserved hypothetical protein.
       0.762
rfaG-16
COG0438 [M] Glycosyltransferase.
 
    0.735
rfaG-11
Glycosyltransferase; COG3754 [M] Lipopolysaccharide biosynthesis protein.
  
    0.693
LSL_0993
UDP-galactose phosphate transferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.619
rfaG-20
COG0438 [M] Glycosyltransferase.
    0.595
rfaG-17
COG0438 [M] Glycosyltransferase.
  
    0.584
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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